BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB014C05LP1|AL426659
(837 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 746 0.0
>3x_Contig1807
Length = 66587
Score = 746 bits (367), Expect = 0.0
Identities = 463/498 (92%), Gaps = 8/498 (1%)
Strand = Plus / Minus
Query: 339 ctcggtgtttcgcgtgtatatttcgtgctgttaccgckgacaagaacaagacttattact 398
||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 54624 ctcggtgtttc-cgtgtatatttct--ctgtaaccgctgacaagaacaagacttattact 54568
Query: 399 ggggagtgcaattcamatagrgcctaaaaatccggkkggctccttgacatacgtkaatrc 458
||| ||||||||||| |||| |||||||||||||| |||||||||||||| || ||| |
Sbjct: 54567 gggaagtgcaattcaaatagagcctaaaaatccggttggctccttgacata-gttaatac 54509
Query: 459 aragaaataaggaaacaaagraggaaaacggaatgaatgtgtyawaagaaagcaaaatcc 518
| ||||||||||| |||||| ||||||||| ||||||||||| | |||||||||||||||
Sbjct: 54508 aaagaaataaggatacaaagaaggaaaacgaaatgaatgtgtcaaaagaaagcaaaatcc 54449
Query: 519 aagcacttcgttaaaatcamagaagcagcatttcgaaaatggccctcaaatcggtaacar 578
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 54448 aagcacttcgttaaaatcaaagaagcagcatttcgaaaatggccctcaaat-ggtaacaa 54390
Query: 579 ctcccagaagacaccagccgcatttagtagcattgtcagttgtgacctaaagctcatttt 638
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 54389 ctcccagaagacaccagcc-catttagtagcattgtcagtagttacctaaagctcatttt 54331
Query: 639 gctgttcctctttatmmtgtactctgcgggacaatttgaacataatgtctttcaccagcg 698
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 54330 gctgttcctctttataatgtactctgcaggacaatttgaacataatgtctttcaccag-g 54272
Query: 699 tcgttgtcmatwacgggttccaattctatccagccagcgtttattatccaatagctctgg 758
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54271 tcattgtcaataacgggttccaattctatccagccagcgtttattatccaatagctctgg 54212
Query: 759 ggagggacataamaatggtttaatttttccatgacaacaacctgtttccgta-gtcttac 817
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 54211 ggagggacataacaatggtttaatttttccatgacaacaacctgtttccgtaggtcttac 54152
Query: 818 gaagtaccagaggcgttc 835
||||||||||||||||||
Sbjct: 54151 gaagtaccagaggcgttc 54134
Score = 236 bits (116), Expect = 7e-62
Identities = 143/155 (92%), Gaps = 3/155 (1%)
Strand = Plus / Minus
Query: 158 agttctgtatggctcctactacttcttgaagcaggcmatgaaaaatatccaaaaagggaa 217
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 54794 agttctgtatggctcca--tacttcttgaagcaggcaatgaaaaatatccaaaaagggaa 54737
Query: 218 cgctatctaccgtracaccttgaccacgtgacctaccgcgtwagamatttaatatctgaa 277
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 54736 cgctatctaccgtaacaccttgaccacgtgacctaccgcgttagacatttaatatctgaa 54677
Query: 278 gaygtycaaatgtyctcatkaaaaatgcgcttaac 312
|| || ||||||| ||||| |||||| ||||||||
Sbjct: 54676 gatgttcaaatgttctcattaaaaat-cgcttaac 54643
Score = 108 bits (53), Expect = 2e-23
Identities = 66/70 (94%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 2 tctcagagtctatagagtgataagaatcgtctgcagcaaaaatagcgtagtaaacgagat 61
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 54925 tctcagagtctatagagtgataagaatcgtctg--acaaaaatagcgtagtaaacgagat 54868
Query: 62 tygattacac 71
| ||||||||
Sbjct: 54867 tcgattacac 54858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.33
Gapped
Lambda K H
1.41 0.716 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3717
Number of Sequences: 1807
Number of extensions: 3717
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 837
length of database: 10,358,551
effective HSP length: 16
effective length of query: 821
effective length of database: 10,329,639
effective search space: 8480633619
effective search space used: 8480633619
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.4 bits)
S1: 12 (24.9 bits)
S2: 49 (100.1 bits)